ULTRA-FAST SINGLE-CELL WORKFLOW

cellHarmony web

Align single-cell data to a reference, explore results and perform comprehensive comparisons between groups

How to Use ReadMe

1. Upload

2. QC and alignment

Min genes Min counts

Min cells Mito %

Minimum cosine similarity score Ambient RNA correction

0%

QC cell counts will appear here while the analysis runs.

Reference Preview

Visualization Panel 1

Select plot type Select gene

Filter data to display

Annotation 1 Values

Annotation 2 Values

Visualization Panel 2

Select plot type Select gene

Filter data to display

Annotation 1 Values

Annotation 2 Values

Differential gene analyses between biological groups (i.e., disease versus controls) are only enabled when two or more samples (multiple h5 files or a single h5ad) are uploaded for the job.